Expression analysis of transcription factors in sugarcane during cold stress / Análise de expressão de fatores de transcrição em cana-de-açúcar sob estresse por frio

Abstract Transcription factors (TF) are a wide class of genes in plants, and these can regulate the expression of other genes in response to various environmental stresses (biotic and abiotic). In the current study, transcription factor activity in sugarcane was examined during cold stress. Initially, RNA transcript reads of two sugarcane cultivars (ROC22 and GT08-1108) under cold stress were downloaded from SRA NCBI database. The reads were aligned into a reference genome and the differential expression analyses were performed with the R/Bioconductor edgeR package. Based on our analyses in the ROC22 cultivar, 963 TF genes were significantly upregulated under cold stress among a total of 5649 upregulated genes, while 293 TF genes were downregulated among a total of 3,289 downregulated genes. In the GT08-1108 cultivar, 974 TF genes were identified among 5,649 upregulated genes and 283 TF genes were found among 3,289 downregulated genes. Most transcription factors were annotated with GO categories related to protein binding, transcription factor binding, DNA-sequence-specific binding, transcription factor complex, transcription factor activity in RNA polymerase II, the activity of nucleic acid binding transcription factor, transcription corepressor activity, sequence-specific regulatory region, the activity of transcription factor of RNA polymerase II, transcription factor cofactor activity, transcription factor activity from plastid promoter, transcription factor activity from RNA polymerase I promoter, polymerase II and RNA polymerase III. The findings of above results will help to identify differentially expressed transcription factors during cold stress. It also provides a comprehensive analysis of the regulation of the transcription activity of many genes. Therefore, this study provides the molecular basis for improving cold tolerance in sugarcane and other economically important grasses.

Resumo Fatores de transcrição (FT) são uma ampla classe de genes em plantas e podem regular a expressão de outros genes em resposta a vários estresses ambientais (estresses bióticos e abióticos). No presente estudo, a atividade do fator de transcrição na cana-de-açúcar foi examinada durante o estresse pelo frio. Inicialmente, as leituras de transcrição de RNA de duas cultivares de cana-de-açúcar (ROC22 e GT08-1108) sob estresse frio foram baixadas do banco de dados SRA NCBI. As leituras foram alinhadas em um genoma de referência e as análises de expressão diferencial foram realizadas com o pacote R / Bioconductor edgeR. Com base em nossas análises no cultivar ROC22, 963 genes TF foram significativamente regulados positivamente sob estresse pelo frio entre um total de 5.649 genes regulados positivamente, enquanto 293 genes TF foram regulados negativamente entre um total de 3.289 genes regulados negativamente. No cultivar GT08-1108, 974 genes TF foram identificados entre 5.649 genes regulados positivamente e 283 genes TF foram encontrados entre 3.289 genes regulados negativamente. Os fatores de transcrição, em sua maioria, foram anotados com categorias GO relacionadas à ligação de proteína, ligação de fator de transcrição, ligação específica de sequência de DNA, complexo de fator de transcrição, atividade de fator de transcrição em RNA polimerase II, atividade de fator de transcrição de ligação de ácido nucleico, atividade de corepressor de transcrição, sequência específica da região reguladora, atividade do fator de transcrição da RNA polimerase II, atividade do cofator do fator de transcrição, atividade do fator de transcrição do promotor do plastídio, atividade do fator de transcrição do promotor da RNA polimerase I, polimerase II e RNA polimerase III. As descobertas dos resultados acima ajudarão a identificar fatores de transcrição expressos diferencialmente durante o estresse pelo frio. Ele também fornece uma análise abrangente da regulação da atividade de transcrição de muitos genes. Portanto, este estudo fornece base molecular para melhorar a tolerância ao frio em cana-de-açúcar e outras gramíneas economicamente importantes.

Expression analysis of transcription factors in sugarcane during cold stress / Análise de expressão de fatores de transcrição em cana-de-açúcar sob estresse por frio

Transcription factors (TF) are a wide class of genes in plants, and these can regulate the expression of other genes in response to various environmental stresses (biotic and abiotic). In the current study, transcription factor activity in sugarcane was examined during cold stress. Initially, RNA transcript reads of two sugarcane cultivars (ROC22 and GT08-1108) under cold stress were downloaded from SRA NCBI database. The reads were aligned into a reference genome and the differential expression analyses were performed with the R/Bioconductor edgeR package. Based on our analyses in the ROC22 cultivar, 963 TF genes were significantly upregulated under cold stress among a total of 5649 upregulated genes, while 293 TF genes were downregulated among a total of 3,289 downregulated genes. In the GT08-1108 cultivar, 974 TF genes were identified among 5,649 upregulated genes and 283 TF genes were found among 3,289 downregulated genes. Most transcription factors were annotated with GO categories related to protein binding, transcription factor binding, DNA-sequence-specific binding, transcription factor complex, transcription factor activity in RNA polymerase II, the activity of nucleic acid binding transcription factor, transcription corepressor activity, sequence-specific regulatory region, the activity of transcription factor of RNA polymerase II, transcription factor cofactor activity, transcription factor activity from plastid promoter, transcription factor activity from RNA polymerase I promoter, polymerase II and RNA polymerase III. The findings of above results will help to identify differentially expressed transcription factors during cold stress. It also provides a comprehensive analysis of the regulation of the transcription activity of many genes. Therefore, this study provides the molecular basis for improving cold tolerance in sugarcane and other economically important grasses.

Fatores de transcrição (FT) são uma ampla classe de genes em plantas e podem regular a expressão de outros genes em resposta a vários estresses ambientais (estresses bióticos e abióticos). No presente estudo, a atividade do fator de transcrição na cana-de-açúcar foi examinada durante o estresse pelo frio. Inicialmente, as leituras de transcrição de RNA de duas cultivares de cana-de-açúcar (ROC22 e GT08-1108) sob estresse frio foram baixadas do banco de dados SRA NCBI. As leituras foram alinhadas em um genoma de referência e as análises de expressão diferencial foram realizadas com o pacote R / Bioconductor edgeR. Com base em nossas análises no cultivar ROC22, 963 genes TF foram significativamente regulados positivamente sob estresse pelo frio entre um total de 5.649 genes regulados positivamente, enquanto 293 genes TF foram regulados negativamente entre um total de 3.289 genes regulados negativamente. No cultivar GT08-1108, 974 genes TF foram identificados entre 5.649 genes regulados positivamente e 283 genes TF foram encontrados entre 3.289 genes regulados negativamente. Os fatores de transcrição, em sua maioria, foram anotados com categorias GO relacionadas à ligação de proteína, ligação de fator de transcrição, ligação específica de sequência de DNA, complexo de fator de transcrição, atividade de fator de transcrição em RNA polimerase II, atividade de fator de transcrição de ligação de ácido nucleico, atividade de corepressor de transcrição, sequência específica da região reguladora, atividade do fator de transcrição da RNA polimerase II, atividade do cofator do fator de transcrição, atividade do fator de transcrição do promotor do plastídio, atividade do fator de transcrição do promotor da RNA polimerase I, polimerase II e RNA polimerase III. As descobertas dos resultados acima ajudarão a identificar fatores de transcrição expressos diferencialmente durante o estresse pelo frio. Ele também fornece uma análise abrangente da regulação da atividade [...].

Expression analysis of transcription factors in sugarcane during cold stress

Abstract Transcription factors (TF) are a wide class of genes in plants, and these can regulate the expression of other genes in response to various environmental stresses (biotic and abiotic). In the current study, transcription factor activity in sugarcane was examined during cold stress. Initially, RNA transcript reads of two sugarcane cultivars (ROC22 and GT08-1108) under cold stress were downloaded from SRA NCBI database. The reads were aligned into a reference genome and the differential expression analyses were performed with the R/Bioconductor edgeR package. Based on our analyses in the ROC22 cultivar, 963 TF genes were significantly upregulated under cold stress among a total of 5649 upregulated genes, while 293 TF genes were downregulated among a total of 3,289 downregulated genes. In the GT08-1108 cultivar, 974 TF genes were identified among 5,649 upregulated genes and 283 TF genes were found among 3,289 downregulated genes. Most transcription factors were annotated with GO categories related to protein binding, transcription factor binding, DNA-sequence-specific binding, transcription factor complex, transcription factor activity in RNA polymerase II, the activity of nucleic acid binding transcription factor, transcription corepressor activity, sequence-specific regulatory region, the activity of transcription factor of RNA polymerase II, transcription factor cofactor activity, transcription factor activity from plastid promoter, transcription factor activity from RNA polymerase I promoter, polymerase II and RNA polymerase III. The findings of above results will help to identify differentially expressed transcription factors during cold stress. It also provides a comprehensive analysis of the regulation of the transcription activity of many genes. Therefore, this study provides the molecular basis for improving cold tolerance in sugarcane and other economically important grasses.

Resumo Fatores de transcrição (FT) são uma ampla classe de genes em plantas e podem regular a expressão de outros genes em resposta a vários estresses ambientais (estresses bióticos e abióticos). No presente estudo, a atividade do fator de transcrição na cana-de-açúcar foi examinada durante o estresse pelo frio. Inicialmente, as leituras de transcrição de RNA de duas cultivares de cana-de-açúcar (ROC22 e GT08-1108) sob estresse frio foram baixadas do banco de dados SRA NCBI. As leituras foram alinhadas em um genoma de referência e as análises de expressão diferencial foram realizadas com o pacote R / Bioconductor edgeR. Com base em nossas análises no cultivar ROC22, 963 genes TF foram significativamente regulados positivamente sob estresse pelo frio entre um total de 5.649 genes regulados positivamente, enquanto 293 genes TF foram regulados negativamente entre um total de 3.289 genes regulados negativamente. No cultivar GT08-1108, 974 genes TF foram identificados entre 5.649 genes regulados positivamente e 283 genes TF foram encontrados entre 3.289 genes regulados negativamente. Os fatores de transcrição, em sua maioria, foram anotados com categorias GO relacionadas à ligação de proteína, ligação de fator de transcrição, ligação específica de sequência de DNA, complexo de fator de transcrição, atividade de fator de transcrição em RNA polimerase II, atividade de fator de transcrição de ligação de ácido nucleico, atividade de corepressor de transcrição, sequência específica da região reguladora, atividade do fator de transcrição da RNA polimerase II, atividade do cofator do fator de transcrição, atividade do fator de transcrição do promotor do plastídio, atividade do fator de transcrição do promotor da RNA polimerase I, polimerase II e RNA polimerase III. As descobertas dos resultados acima ajudarão a identificar fatores de transcrição expressos diferencialmente durante o estresse pelo frio. Ele também fornece uma análise abrangente da regulação da atividade de transcrição de muitos genes. Portanto, este estudo fornece base molecular para melhorar a tolerância ao frio em cana-de-açúcar e outras gramíneas economicamente importantes.

Root deformation affects mineral nutrition but not leaf gas exchange and growth of Genipa americana seedlings during the recovery phase after soil flooding / A deformação de raízes afeta a nutrição mineral mas não as trocas gasosas foliares e o crescimento de mudas de Genipa americana durante a fase de recuperação após o alagamento do solo

Root deformation (RD) caused by errors in the pricking out process are irreversible and very difficult to detect in container-grown seedlings at the time of planting in the field. The objective of this study was to evaluate the effects of RD on leaf gas exchange, growth, biomass allocation and mineral nutrition of G. americana seedlings during the recovery phase after soil flooding. Four-months-old seedlings, with and without RD, were flooded for 42 days and their recovery was evaluated 28 days after soil drainage. There were no significant interactions between RD and soil flooding for all leaf gas exchange, growth and mineral nutrition after soil drainage, with the exception of leaf P concentrations. In plants with no RD, the P concentration in leaves of non-flooded plants was significantly higher than that of plants with RD. Soil flooding and RD did not influence leaf or root N concentrations or whole-plant N content. RD increased the K concentration in the roots, but not in the leaves. Changes in the nutrient concentrations in leaves and roots indicate that RD may affect physiological performance of seedlings after planting in the field.

A deformação da raiz (RD) causada por erros no processo de repicagem é irreversível e difícil de detectar em mudas produzidas em embalagens no momento do plantio no campo. O objetivo deste estudo foi avaliar os efeitos do RD nas trocas gasosas foliares, crescimento, alocação de biomassa e nutrição mineral de mudas de G. americana na fase de recuperação após o alagamento do solo. Mudas com quatro meses de idade, com e sem RD, foram alagadas por 42 dias e a sua recuperação foi avaliada 28 dias após a drenagem do solo. Não houve interação significativa entre RD e alagamento do solo nas trocas gasosas foliares, crescimento e nutrição mineral após a drenagem, com exceção das concentrações de P foliar. Em plantas sem RD, a concentração de P nas folhas de plantas não alagadas foi significativamente maior que a das plantas com RD. O alagamento do solo e a RD não influenciaram as concentrações de N nas folhas e raízes, e no conteúdo de N na planta inteira. A RD aumentou a concentração de K nas raízes, mas não nas folhas. Alterações nas concentrações de nutrientes nas folhas e raízes indicam que a RD pode afetar o desempenho fisiológico das mudas após o plantio no campo.

Root deformation affects mineral nutrition but not leaf gas exchange and growth of Genipa americana seedlings during the recovery phase after soil flooding / A deformação de raízes afeta a nutrição mineral mas não as trocas gasosas foliares e o crescimento de mudas de Genipa americana durante a fase de recuperação após o alagamento do solo

Root deformation (RD) caused by errors in the pricking out process are irreversible and very difficult to detect in container-grown seedlings at the time of planting in the field. The objective of this study was to evaluate the effects of RD on leaf gas exchange, growth, biomass allocation and mineral nutrition of G. americana seedlings during the recovery phase after soil flooding. Four-months-old seedlings, with and without RD, were flooded for 42 days and their recovery was evaluated 28 days after soil drainage. There were no significant interactions between RD and soil flooding for all leaf gas exchange, growth and mineral nutrition after soil drainage, with the exception of leaf P concentrations. In plants with no RD, the P concentration in leaves of non-flooded plants was significantly higher than that of plants with RD. Soil flooding and RD did not influence leaf or root N concentrations or whole-plant N content. RD increased the K concentration in the roots, but not in the leaves. Changes in the nutrient concentrations in leaves and roots indicate that RD may affect physiological performance of seedlings after planting in the field.

A deformação da raiz (RD) causada por erros no processo de repicagem é irreversível e difícil de detectar em mudas produzidas em embalagens no momento do plantio no campo. O objetivo deste estudo foi avaliar os efeitos do RD nas trocas gasosas foliares, crescimento, alocação de biomassa e nutrição mineral de mudas de G. americana na fase de recuperação após o alagamento do solo. Mudas com quatro meses de idade, com e sem RD, foram alagadas por 42 dias e a sua recuperação foi avaliada 28 dias após a drenagem do solo. Não houve interação significativa entre RD e alagamento do solo nas trocas gasosas foliares, crescimento e nutrição mineral após a drenagem, com exceção das concentrações de P foliar. Em plantas sem RD, a concentração de P nas folhas de plantas não alagadas foi significativamente maior que a das plantas com RD. O alagamento do solo e a RD não influenciaram as concentrações de N nas folhas e raízes, e no conteúdo de N na planta inteira. A RD aumentou a concentração de K nas raízes, mas não nas folhas. Alterações nas concentrações de nutrientes nas folhas e raízes indicam que a RD pode afetar o desempenho fisiológico das mudas após o plantio no campo.

Root deformation affects mineral nutrition but not leaf gas exchange and growth of Genipa americana seedlings during the recovery phase after soil flooding

Abstract Root deformation (RD) caused by errors in the pricking out process are irreversible and very difficult to detect in container-grown seedlings at the time of planting in the field. The objective of this study was to evaluate the effects of RD on leaf gas exchange, growth, biomass allocation and mineral nutrition of G. americana seedlings during the recovery phase after soil flooding. Four-months-old seedlings, with and without RD, were flooded for 42 days and their recovery was evaluated 28 days after soil drainage. There were no significant interactions between RD and soil flooding for all leaf gas exchange, growth and mineral nutrition after soil drainage, with the exception of leaf P concentrations. In plants with no RD, the P concentration in leaves of non-flooded plants was significantly higher than that of plants with RD. Soil flooding and RD did not influence leaf or root N concentrations or whole-plant N content. RD increased the K concentration in the roots, but not in the leaves. Changes in the nutrient concentrations in leaves and roots indicate that RD may affect physiological performance of seedlings after planting in the field.

Resumo A deformação da raiz (RD) causada por erros no processo de repicagem é irreversível e difícil de detectar em mudas produzidas em embalagens no momento do plantio no campo. O objetivo deste estudo foi avaliar os efeitos do RD nas trocas gasosas foliares, crescimento, alocação de biomassa e nutrição mineral de mudas de G. americana na fase de recuperação após o alagamento do solo. Mudas com quatro meses de idade, com e sem RD, foram alagadas por 42 dias e a sua recuperação foi avaliada 28 dias após a drenagem do solo. Não houve interação significativa entre RD e alagamento do solo nas trocas gasosas foliares, crescimento e nutrição mineral após a drenagem, com exceção das concentrações de P foliar. Em plantas sem RD, a concentração de P nas folhas de plantas não alagadas foi significativamente maior que a das plantas com RD. O alagamento do solo e a RD não influenciaram as concentrações de N nas folhas e raízes, e no conteúdo de N na planta inteira. A RD aumentou a concentração de K nas raízes, mas não nas folhas. Alterações nas concentrações de nutrientes nas folhas e raízes indicam que a RD pode afetar o desempenho fisiológico das mudas após o plantio no campo.

The role of SnRK2 in the response to stress, the growth and development of plants / 生物工程学报

Sucrose non-fermenting-1-related protein kinase 2 (SnRK2) is a specific Ser/Thr protein kinase in plants. SnRK2 can regulate the expression of downstream genes or transcription factors through phosphorylation of substrates to achieve stress resistance regulation in different tissue parts, and make plants adapt to adverse environment. SnRK2 has a small number of members and a molecular weight of about 40 kDa, and contains a conserved N-terminal kinase domain and a divergent C-terminal regulatory domain, which plays an important role in the expression of enzyme. This review summarized the recent research progresses on the discovery, structure, and classification of SnRK2, and its function in response to various stresses and in regulating growth and development, followed by prospecting the future research direction of SnRK2. This review may provide a reference for genetic improvement of crop stress resistance.

Invertebrados bentônicos associados a macrófitas aquáticas em um reservatório subtropical brasileiro / Benthic invertebrates associated with the aquatic macrophytes in a Brazilian subtropical reservoir

RESUMO As atividades humanas afetam a disponibilidade e a qualidade da água em muitos ecossistemas aquáticos. A Barragem Santa Bárbara é um importante manancial de abastecimento público do município de Pelotas, Rio Grande do Sul, Brasil, que vem sofrendo um processo de eutrofização acelerado, tornando importante o uso de monitoramentos ambientais como ferramenta de controle desses mananciais. O objetivo deste estudo foi avaliar a comunidade de macroinvertebrados bentônicos presentes nas raízes de macrófitas aquáticas flutuantes e suas relações com a qualidade da água na bacia de acumulação da Barragem Santa Bárbara. Em 2018, foram realizadas quatro amostragens em dois ambientes desse ecossistema. As análises físico-químicas foram realizadas para correlacionar com as análises biológicas. Os macroinvertebrados bentônicos retirados das raízes das macrófitas aquáticas flutuantes foram triados e identificados ao menor nível taxonômico possível. Para análise de dados, foram utilizadas análises de regressão múltipla, análise de variância (ANOVA) e Análise de Componentes Principais. Os macroinvertebrados bentônicos foram analisados também quanto à ocorrência de frequência, riqueza e abundância, e ao índice de diversidade de Shannon-Wiener. Foi possível registrar 13.154 espécimes de macroinvertebrados bentônicos associados a 100 g de peso seco de macrófitas aquáticas flutuantes, divididos em 35 táxons e distribuídos em nove ordens e 27 famílias. Os grupos mais abundantes foram Amphipoda, Chironomidae e Oligochaeta. O índice de diversidade apresentou média de H' = 1,67, classificando o ecossistema aquático como moderadamente poluído. As ferramentas utilizadas neste estudo são úteis para ações de gerenciamento e preservação de mananciais, principalmente os utilizados para abastecimento público.

ABSTRACT Human activities affect the availability and quality of water in many aquatic ecosystems. The Santa Bárbara Dam is an important source of public water supply in the city of Pelotas, Rio Grande do Sul, Brazil, which has been undergoing an accelerated eutrophication process, thus making it important to use environmental monitoring as a control tool for these sources. The aim of this study was to evaluate the community of benthic macroinvertebrates in the roots of floating aquatic macrophytes and their connection with water quality in the Santa Bárbara Dam accumulation basin. Four samples were taken in 2018, in two environments of this ecosystem. Physical-chemical analyses were conducted to correlate with biological analyses. Benthic macroinvertebrates taken from the roots of floating aquatic macrophytes were screened and identified at the lowest possible taxonomic level. For data analysis, multiple regression analysis, ANOVA, and Principal Component Analysis were used. Benthic macroinvertebrates were also analyzed for frequency, richness and abundance, and the Shannon-Wiener diversity index. It was possible to register 13.154 specimens of benthic macroinvertebrates associated with 100 g of dry weight of floating aquatic macrophytes, divided into 35 taxa, and distributed in 09 orders and 27 families. The most abundant groups were Amphipoda, Chironomidae, and Oligochaeta. The diversity index showed an average of H '= 1.67, classifying the aquatic ecosystem as moderately polluted. The tools used in this study are useful for managing and preservation of water sources, especially those used for public supply.

Motile aeromonad septicemia (MAS) at Cyprinus carpio L, 1758 (Actinopterygii: Cyprinidae) in Lake Tödürge (Sivas/Turkey) / [Septicemia móvel por aeromonada (SMA) em Cyprinus carpio L, 1758 (Actinopterygii: Cyprinidae) no lago Tödürge (Sivas, Turquia)]

In this study, fish's morphologic and anatomic lesions caused by motile aeromonad septicemia (MAS) depending on environmental stress in carp, Cyprinus carpio population living in Lake Tödürge were identified. Various morphological and anatomical deformations and lesions were observed in the body of approximately 17% (252 fish specimens) of a total of 1488 carp samples. Bacteria are grown from all wipe samples. Bacterial colonies have a gray-white appearance with round, convex and smooth edges. 15-20 cfu colonies were observed in each aerop culture. As a result of analysis of wet wipe samples from infected fish's skin, gill, kidney and liver, it is determined that the bacteria which causes septicemia is Aeromonas sobria from the Aeromonadaceae family (with 99.2% confidence value). No bacteria were grown in cultures except A. sobria. Some symptoms of the infection are inflammation on different parts of the fish bodies, eruption on skin and scales, dermal necrosis, degeneration at soft rays of the fins, exophthalmos, and purulent liquid accumulation in the abdominal cavity, etc. Infected fish were most commonly encountered in July and August (water temperature above 20ºC), the lowest in October and November (water temperature below 10ºC).(AU)

Neste estudo, foram identificadas lesões morfológicas e anatômicas causadas por septicemia móvel por aeromônios (MPA), dependendo do estresse ambiental da carpa, a população de Cyprinus carpio que vive no lago Tödürge foi identificada. Várias deformações e lesões morfológicas e anatômicas foram observadas no corpo de aproximadamente 17% (252 amostras de peixes) de um total de 1488 amostras de carpa. As bactérias são cultivadas a partir de todas as amostras de limpeza. As colônias bacterianas têm uma aparência branco-acinzentada, com bordas arredondadas, convexas e lisas. Foram observadas 15-20 colônias de UFC em cada cultura de aerop. Como resultado da análise de amostras de lenços umedecidos da pele, brânquias, rins e fígado de peixes infectados, é determinado que a bactéria que causa a septicemia é a Aeromonas sobria, da família Aeromonadaceae (com valor de confiança de 99,2%). Nenhuma bactéria foi cultivada em culturas, exceto A. sobria. Alguns sintomas da infecção são inflamação em diferentes partes dos corpos dos peixes, erupção na pele e escamas, necrose dérmica, degeneração aos raios moles das barbatanas, exoftalmia e acúmulo de líquido purulento na cavidade abdominal, entre outros. Os peixes infectados eram encontrados com maior frequência em julho e agosto (temperatura da água acima de 20ºC), e eram menos comumente encontrados em outubro e novembro (temperatura da água abaixo de 10ºC).(AU)

Transcriptional analysis of Rhazya stricta in response to jasmonic acid

BACKGROUND: Jasmonic acid (JA) is a signal transducer molecule that plays an important role in plant development and stress response; it can also efficiently stimulate secondary metabolism in plant cells. RESULTS: RNA-Seq technology was applied to identify differentially expressed genes and study the time course of gene expression in Rhazya stricta in response to JA. Of more than 288 million total reads, approximately 27% were mapped to genes in the reference genome. Genes involved during the secondary metabolite pathways were up- or downregulated when treated with JA in R. stricta. Functional annotation and pathway analysis of all up- and downregulated genes identified many biological processes and molecular functions. Jasmonic acid biosynthetic, cell wall organization, and chlorophyll metabolic processes were upregulated at days 2, 6, and 12, respectively. Similarly, the molecular functions of calcium-transporting ATPase activity, ADP binding, and protein kinase activity were also upregulated at days 2, 6, and 12, respectively. Time-dependent transcriptional gene expression analysis showed that JA can induce signaling in the phenylpropanoid and aromatic acid pathways. These pathways are responsible for the production of secondary metabolites, which are essential for the development and environmental defense mechanism of R. stricta during stress conditions. CONCLUSIONS: Our results suggested that genes involved in flavonoid biosynthesis and aromatic acid synthesis pathways were upregulated during JA stress. However, monoterpenoid indole alkaloid (MIA) was unaffected by JA treatment. Hence, we can postulate that JA plays an important role in R. stricta during plant development and environmental stress conditions.

Effect of salinity on lipid profile of Cyprinus carpio reared in inland saline water

Aim: The present study was undertaken to investigate the influence of different salinity levels on gonadal tissue and serum biochemical parameters of Cyprinus carpio reared in inland saline groundwater to standardize the optimal salinity level for better maturation and seed production.Methodology: A 90 days experiment was conducted in non-drainable rectangular earthen ponds (n= 8) to study the effects of different salinity (0, 5, 10 and 15 ppt) levels on distribution of lipid class profile in Cyprinus carpio reared in inland saline groundwater. Gonads and serum were collected on 15 days interval and lipid classes, cholesterol, phospholipid and triacylglycerol were analyzed by using extracted total lipid. Results: The concentration of different forms of lipids were significantly influenced by salinity and their concentration increased with development of maturity stages but lowest level was recorded at ovulation or spermiation stages. It was observed that significantly (p < 0.05) highest level of all lipids was found at 0 and 5 ppt compared to 10 and 15 ppt salinity. Interpretation: The present study revealed that various lipid class fatty acids varied according to salinity and maturity stages of C. carpio in inland saline groundwater. Further, it also indicated that C. carpio has a tendency to adapt, survive, tolerate and reproduce in inland saline environment salinity ranging from 0-15 ppt and was found optimal at 5 ppt based on the reproductive ability

Strategies for medicinal plants adapting environmental stress and "simulative habitat cultivation" of Dao-di herbs / 中国中药杂志

This paper analyzed life form, habitats and environmental stresses of medicinal plants and algal fungi collected in Chinese Pharmacopoeia(2015). ①It was found that only 0.94% of the medicinal plants mainly cultivated in field. The most common habitats of medicinal plants are divided into two types: those whose natural habitats are forest margins/undergrowth(about 42.53%) and those whose natural habitats are roadside, hillside, wasteland/sand(about 43.78%). The former mainly faces environmental stresses such as weak light, pests and diseases; the latter often faces the main environmental stresses of drought, strong light, ultraviolet radiation, high temperature, low temperature(day and night or annual temperature difference is large), nutrient deficiency, pests and so on. ②Based on analyzing the strategies of medicinal plants to adapt to environmental stresses, it is pointed out that the synthesis and accumulation of secondary metabolites are the most important strategies of medicinal plants to protect against environmental stresses. In the process of long-term adaptation to specific stress, the accumulation of relevant genetic variation and epigenetic inheritance has become an important condition for the formation of quality of medicinal plants. ③It is proposed that "simulative habitat cultivation" has obvious advantages in balancing growth and secondary metabolism and guaranting the quality of traditional Chinese medicinal materials.

Saline stress effect on cowpea beans growth under biofertilizer correction / Efeito do estresse salino no crescimento do feijão-caupi sob a correção de biofertilizante

New strategies to increase growth and food crops productivity in saline soils are priorities in the research. The experiment was carried out in a pot to investigate the growth of cowpea cv. Canapu in response to saline stress under the correction of a mixed biofertilizer. Five irrigation water salinity levels and three doses of the mixed biofertilizer were tested, with four replicates at each level. The increase in salinity level resulted in reductions in stem diameter, leaves number, shoot biomass and roots. The mixed biofertilizer use was able to minimize the effect of salinity in all analyzed variables, improving the cowpea growth and development, protecting from saline stress negative impacts. In addition, the mixed biofertilizer use may be an option to improve crop growth and productivity in salt affected soils.

Novas estratégias para aumentar o crescimento e a produtividade de plantas cultivadas em solos salinos representam prioridades na pesquisa. O experimento foi conduzido em vaso, para investigar o crescimento do Feijão-Caupi em resposta ao estresse salino sob a correção de um biofertilizante misto. Cinco níveis de salinidade da água de irrigação e três doses do biofertilizante misto foram testados, com quatro repetições cada nível. O biofertilizante misto foi capaz de minimizar o estresse salino.O aumento do nível de salinidade resultou em reduções no diâmetro do caule, número de folhas, biomassa da parte aérea e das raízes. O uso do biofertilizante misto minimizou o efeito da salinidade em todas as variáveis analisadas, melhorando o crescimento e desenvolvimento do feijão caupi, protegendo-o dos impactos negativos do estresse salino. O uso de biofertilizante misto pode ser uma opção para melhorar o crescimento da cultura e a produtividade em solos afetados por sais.

Skull asymmetries in wild boar (Sus scrofa LINNAEUS, 1758) / Assimetrias do crânio de javalis (Sus scrofa LINNAEUS, 1758)

Organisms can develop different kinds of asymmetry when deviations from expected perfect symmetry occur. Among others are fluctuating asymmetry (FA) and directional asymmetry (DA). FA represents small random differences between corresponding parts on the left and right sides of an individual in bilaterally paired structures. It is thought that FA reflects an organism's ability to cope with genetic and environmental stress during growth. DA occurs whenever one side on the plane of symmetry develops more than the other side, and has a genetic component. In this research, we examined the expression of morphological symmetry in 38 skulls of different age groups of wild boar (Sus scrofa), on their ventral aspect, using two-dimensional coordinates of 27 landmarks. Analyses showed the presence of significant FA and DA in the entire sample, detecting also distinctive differences between age groups. The obtained results show that the shape differences in different age groups could reasonably be a consequence of a response to environmental factors for FA and a masticatory lateralization for DA.(AU)

Os organismos podem desenvolver diferentes tipos de assimetria quando ocorrem desvios da pefeita simetria esperada. Entre os diversos tipos de assimetria existentes duas merecem especial destaque: a flutuante (AF) e a directional (AD). A AF é representada por pequenas diferenças casuais entre as partes correspondents das laterais direita e esquerda de um indivíduo em estruturas pareadas bilateralmente; acredita-se que elas reflitam a habilidade de um organismo adaptar-se a fatores estressantes genéticos e ambientais observados durante o seu crescimentos. A AD ocorre quando um lado da assimetria plana desenvolve-se mais do que o outro e há um componente genético. No presente trabalho foi analisada a expresssão da simetria morfológica de 38 crânios de diferentes grupos etários de javalis (Sus scrofa), nos seus aspectos ventrais, com o emprego de duas coordenadas dimensionais de 27 pontos anatômicos homólogos. As análises efetuadas revelaram a existência de valores significantes de AF e AD em toda a amostra trabalhada, detectando inclusive diferenças entre os grupos etários. Os resultados obtidos demonstraram que as diferentes formas observadas nos diferentes grupos etários podem ser consequência de uma resposta a fatores ambientais para a AF e a lateralização da mastigação para a AD.(AU)

Research Advances in Sorbus Plants / 中国实验方剂学杂志

The chemical constituents of plants from the genus Sorbus are mainly flavonoids,biphenyls,terpenoids and organic acids.Pharmacological researches proved that the chemical components isolated from Sorbus plants has antitussive,relieving asthma,antibacterial and antioxidant effect.Moreover,the Sorbus plants were used as landscape trees.There is a bright developing prospect about Sorbus plants.In this review,we give an overview of the significant progress and the latest findings made in Sorbus plants,such as the stress response,chemical compositions,pharmacological activities and the propagation technology.The results including as following:①more evidences are needed for species identification of Sorbus,②the researches about Sorbus plants is focused on only a few species(S. alnifolia,S. amabilis,S. pohuashanensis,S. tianschanica,S. aucuparin),③the existing researches centre upon chemical composition analysis and propagation and cultivation;the formation and mechanism of active components are rarely reported.Thus,the research of Sorbus plants is still in the early period,and this review paper will provide theoretical basis and reference for further research of Sorbus plants.

Identification and expression pattern analysis of a Moso Bamboo LTR retrotransposon / 生物工程学报

To develop more active LTR retrotransposons in Phyllostachys edulis, a Ph. edulis LTR retrotransposon (Ph-LTR2) was identified, and the expression pattern of the transposon under stress was systematically analyzed. Ph-LTR2 transposon is 6 030 bp in length and belongs to the Reina subfamily in the Ty3-Gypsy family. With the similarity of 96.41% of both LTR sequences, the Ph-LTR2 transposon inserted the moso bamboo genome about 61.92 thousand years ago. There are 5 copies identified in the genome. The Ph-LTR2 transposon domain includes GAG (gag protein) protein domain, PR (Proteases) protein domain, RT (Reverse transcriptase) protein domain, RH (Ribonuclease H) protein domain, INT (Integrase) protein domain and CHR (Chromatin organization modifier) protein domain. The expression patterns of INT, RT and RH were detected by real-time quantitative PCR. The three domains were found to have specific expression patterns at different tissues of the bamboo. Under the conditions of low/high temperature, methylation inhibitors treatments, irradiation and high salt stress, transcription levels of the three domains of the Ph-LTR2 transposon increased with different degrees. Specifically, after treatment with low/high temperature and methylation inhibitors, the transcription level was up-regulated; after low dose radiation treatment and low concentration of salt solution treatment, the transcription level was also increased, but the expression level decreased with increasing dose of radiation and concentration of salt solution. These results indicate that the expression pattern of the Ph-LTR2 transposon responds to the changes of the external environment, but the exact mechanism is not yet known. The results of this study laid a certain theoretical foundation for the development of the genetic tool based on Ph-LTR2 transposons.

Regulation and adaptive evolution of industrial microorganisms towards genetic and environmental disturbances / 生物工程学报

Harnessing industrial microorganisms to utilize renewable feedstocks and meanwhile produce biofuels, bulk chemicals, food ingredients, nutraceuticals, pharmaceuticals, industrial enzymes, etc. is the basis for successful biological industries. Robust traits of industrial microorganisms including high yield and productivity as well as stress tolerance are controlled by sophisticated genetic regulatory networks. Engineering robustness of industrial microorganisms requires systematic and global perturbations at the genome-wide scale to accelerate the accumulation of diversified genotypic mutations, thus generating desirable phenotypes. We review heve the mechanisms of genetic regulation and stress response in robust industrial organisms, the global perturbations and multiplex accelerated evolution at the genome-wide scale, as well as the global perturbation of cellular redox balance. In the future, based on system biology and synthetic biology, more efforts should be further devoted to understanding the mechanisms behind robust traits in industrial microorganisms under industrial niches for modeling and prediction as well as systematic engineering.

Relationship between thermal comfort indices and internal temperature of grazing lactating Holstein × Gyr cows in western Amazonia / Relação entre índices de estresse térmico e a temperatura interna de vacas Holandês x Gir lactantes em pastejo na Amazônia Ocidenta

The relationship between the indices of thermal comfort and internal temperature in lactating cows was evaluated inRondônia, western Amazonia in a 2 × 2 crossover trial carried out with eight Girolando cows, ½ Holstein × ½ Gyr (n=4) and Holstein × » Gyr (n=4), grazing palisade grass supplemented with or without soybean oil concentrates. Data logger thermometers adapted to intravaginal devices (hormone free) were used to measure internal temperatures (IT) every 10 min over 48 h. Concomitantly, environmental parameters (air temperature, relative humidity, wind speed, and solar radiation) were collected for the estimation of the temperature-humidity index (THI), equivalent temperature index (ETI), and predicted respiratory rate (PRR). Supplementation with soybean oil did not affect the internal temperature of the cows. IT varied significantly between the genetic groups, with the highest mean observed at night in the Holstein × » Gyr cows, compared with that in the ½ Holstein × ½ Gyr cows (39.54 °C vs 39.06 °C, respectively). THI, ETI, and PRR were significantly and positively correlated with the IT of the Girolando cows; however, the PRR was not found to be adequate in indicating the night-time heat stress in cows.

A relação entre índices de conforto térmico com a temperatura interna de vacas lactantes foi avaliada em Rondônia, na Amazônia Ocidental, em um ensaio crossover 2x2 utilizando oito vacas Girolando, ½ Holandês x ½ Gir (n=4) e Holandês x » Gir (n=4) pastejando capim-marandu suplementadas com concentrados contendo ou não óleo de soja. A temperatura interna (TI) dos animais foi aferida com termômetros eletrônicos adaptados em dispositivos intravaginais (livres de hormônio) a cada 10 minutos durante 48h. Concomitantemente, dados climáticos (temperatura do ar, umidade relativa do ar, velocidade do vento e radiação solar) foram coletados para cálculo dos índices de temperatura e umidade (ITU), índice de temperatura equivalente (ITE) e o índice de frequência respiratória predita (PFR). A suplementação com óleo de soja não afetou a temperatura interna das vacas. A TI variou significativamente entre os grupos genéticos, com a maior média observada à noite nas vacas Holandês × » Gir em relação às ½ Holandês × ½ Gir (39,54 °C vs 39,06 °C, respectivamente). ITU, ITE e PFR tiveram correlação significativa e positiva com a TI de vacas Girolando, mas o PFR não foi adequado para indicar estresse térmico em vacas no período da noite.

Questioning the environmental stress hypothesis for gall diversity of restinga vegetation on dunes

he Atlantic Coast Restinga is a mosaic of plant communities with a distinct floristic and phytophysiognomy, exposed to luminous, thermal, and saline stresses. Plants of the restinga must have special features commonly associated to xeric environments, and are expected to host a high diversity of galling herbivores. We studied gall morphotypes, and recorded the diversity of galls on plants growing in sand dunes in a remnant area of restinga (Acaraí State Park) in São Francisco do Sul, Santa Catarina State, Brazil. The sampling was done in four plots (250 x 5 m), constituting a total area of 5 000 m², during April, May and June. Plant branches (n ≥ 5) with galls were sampled, identified, and the galls were photographed. The galls were classified into eight morphotypes, associated to eight host plants constituting 15 host plants - galling herbivores systems. The identification of the gall - inducers was based on literature, and on the species-specific feature of this kind of host plant-gall inducers interaction. There was a predominance of leaf galls, green in color. The most common morphotypes were the globoid, lenticular, conical, rosette, marginal, and fusiform galls, similarly to the inventories performed on other Brazilian biomes. Despite the environmental stresses, the xeric features of the dunes of the ASP, and the high local plant diversity, the diversity of galling herbivores were low. Varronia curassavica (Boraginaceae), Smilax campestris (Smilacaceae), and Guapira opposita (Nyctaginaceae) were superhosts of galling herbivores in the dunes, with about 70 % of the total associated parasites. The environmental effect seems to be neutral, either for the host plants or for the generation of gall morphotypes. Alternatively, the scarce nutritional resources could be restrictive for the establishment of the galling herbivores inside plant tissues. Rev. Biol. Trop. 63 (4): 959-970. Epub 2015 December 01.

a Costa Atlántica Restinga es un mosaico de comunidades de plantas con una florística distinta y fitofisionomía, expuestas al estrés lumínico, térmico y salino. Las plantas de la restinga deben tener características especiales comúnmente asociadas con ambientes xerófilos, y se espera que alberguen una gran diversidad de herbívoros de agallas. Estudiamos morfotipos de agallas, y registramos la diversidad de agallas en las plantas que crecen en las dunas de arena en un área remanente de restinga (State Park Acaraí) en São Francisco do Sul, estado de Santa Catarina, Brasil. El muestreo se realizó en cuatro parcelas (250 x 5 m), lo que constituye una superficie total de 5 000 m², durante abril, mayo y junio. Las ramas de la planta (n ≥ 5) con agallas se muestrearon, identificaron y las agallas se fotografiaron. Las agallas se clasificaron en ocho morfotipos, asociados a ocho plantas hospederas que constituyen 15 sistemas planta hospera-herbívoro de agallas. La identificación de los inductores de agallas se basó en la literatura y en la característica específica de la especie de este tipo de interacción planta-inductor de agallas. Hubo un predominio de agallas en las hojas, de color verde. Los morfotipos más comunes fueron: globoides, lenticular, cónico, roseta, marginal y fusiforme, de manera similar a los inventarios realizados en otros biomas brasileños. A pesar de las presiones ambientales, las características xerófitas de las dunas de la ASP, y la alta diversidad de plantas locales, la diversidad de herbívoros de agallas era baja. Varronia curassavica (Boraginaceae), Smilax campestris (Smilacaceae) y Guapira opposita (Nyctaginaceae) fueron super-hospederos de herbívoros de agallas en las dunas, con alrededor del 70 % del total de parásitos asociados. El efecto del ambiente parece ser neutral, ya sea para las plantas hospederas o para la generación de morfotipos de agallas. Por otra parte, los recursos nutricionales escasos podrían ser restrictivos para el establecimiento de los herbívoros parasíticos dentro de los tejidos vegetales.

The effect of high concentrations of glycerol on the growth, metabolism and adaptation capacity of Clostridium butyricum DSP1

Background The production of biofuels from renewable energy sources is one of the most important issues in biotechnology today. The process is known to generate various by-products, for example glycerol that is obtained in the making of biodiesel from rapeseed oil. Crude glycerol may be utilized in many ways, including microbial conversion to 1,3-propanediol. The main drawback of that technology is the use of high concentrations of glycerol, which inhibits the growth of bacterial cells. Results This study investigated the impact of crude glycerol on Clostridium butyricum DSP1 and its ability to adapt to an environment of high osmotic pressure. It was found that a crude glycerol concentration of up to 70 g/L did not have an inhibitory effect on C. butyricum DSP1. Adaptation procedures involving the passage of metabolically active biomass from a fermentation medium with a lower concentration of crude glycerol to one with a greater substrate concentration allowed breaking the barrier of high osmotic pressure (150 g/L crude glycerol) and receiving a 1,3-PD concentration of 74 g/L in a batch culture operation. The work looked into intracellular modifications shown by proteomic profiling in order to explain the mechanisms underlying the response and adaptation of bacterial cells exposed to unfavorable environmental conditions. Conclusions This study of the effect of glycerol on the growth and metabolism of C. butyricum DSP1 demonstrated that the maximum substrate concentrations that do not inhibit the metabolic activity of bacterial cells are 90 g/L and 70 g/L for pure and crude glycerol, respectively.